STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35377.1Hypothetical protein; KEGG: cal:orf19.4072 2.7e-09 HYR10; similar to cell surface flocculin K01186; Psort location: OuterMembrane, score: 9.49. (686 aa)    
Predicted Functional Partners:
EFB35373.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
       0.678
EFB35374.1
Hypothetical protein.
       0.678
EFB35375.1
Hypothetical protein.
       0.678
EFB35376.1
Hypothetical protein.
       0.678
EFB35378.1
PEGA domain protein; KEGG: aba:Acid345_0037 0.00014 serine/threonine protein kinase K08884.
   
  0.667
EFB35372.1
Hypothetical protein.
  
  
 0.530
EFB35441.1
SusD family protein.
  
 
  0.482
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.442
EFB36430.1
Peptidase family M49; KEGG: bth:BT1846 8.7e-220 putative dipeptidyl-peptidase III K01277; Psort location: Cytoplasmic, score: 8.96.
  
   0.438
EFB36413.1
FtsK/SpoIIIE family protein; KEGG: pen:PSEEN2212 2.0e-95 ftsK; cell division protein FtsK; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.434
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.