STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35378.1PEGA domain protein; KEGG: aba:Acid345_0037 0.00014 serine/threonine protein kinase K08884. (535 aa)    
Predicted Functional Partners:
EFB34718.1
GDSL-like protein; KEGG: chu:CHU_0721 4.0e-25 hypothetical protein K01238.
  
 
  0.752
EFB36836.1
Cellulase (glycosyl hydrolase family 5); KEGG: sde:Sde_2636 9.8e-38 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
  0.719
EFB35377.1
Hypothetical protein; KEGG: cal:orf19.4072 2.7e-09 HYR10; similar to cell surface flocculin K01186; Psort location: OuterMembrane, score: 9.49.
   
  0.667
EFB36932.1
Pectinesterase; KEGG: chu:CHU_0744 9.4e-07 CHU large protein K01238; Psort location: Extracellular, score: 9.96.
  
 
  0.629
EFB36413.1
FtsK/SpoIIIE family protein; KEGG: pen:PSEEN2212 2.0e-95 ftsK; cell division protein FtsK; Psort location: CytoplasmicMembrane, score: 10.00.
    
   0.485
EFB35849.1
Hypothetical protein.
    
   0.469
EFB34224.1
Hypothetical protein; KEGG: cps:CPS_1104 0.0014 dipeptidyl peptidase IV K01278.
  
     0.469
EFB36701.1
WD40-like protein; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
   0.464
EFB33945.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.461
EFB35278.1
Hypothetical protein.
  
     0.454
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.