STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35386.1Putative exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (64 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
 0.999
EFB34548.1
Positive regulator of sigma(E), RseC/MucC.
  
     0.512
EFB35388.1
Putative phage head-tail adaptor; KEGG: chu:CHU_3033 2.3e-38 serine protease.
       0.502
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.488
EFB34190.1
Hypothetical protein.
 
   
 0.488
EFB35485.1
Hypothetical protein; KEGG: ptr:470307 0.00018 ROCK2, LOC470307; Rho-associated, coiled-coil containing protein kinase 2 K04514.
  
     0.483
EFB35389.1
MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.469
EFB35416.1
Polyprenyl synthetase; KEGG: bfs:BF3533 9.3e-97 putative isoprenoid biosynthesis related protein K00787:K00795; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
  
  
 0.467
EFB34324.1
Polyprenyl synthetase; KEGG: bfr:BF0092 1.6e-92 octaprenyl-diphosphate synthase K02523; Psort location: Cytoplasmic, score: 9.26; Belongs to the FPP/GGPP synthase family.
  
  
 0.467
EFB35391.1
Hypothetical protein; KEGG: sat:SYN_01231 6.8e-23 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.96.
       0.441
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.