STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35403.1OmpA family protein; Psort location: OuterMembrane, score: 9.92. (660 aa)    
Predicted Functional Partners:
EFB36473.1
Tetratricopeptide repeat protein.
  
 0.923
EFB35269.1
Hypothetical protein.
 
 
 0.864
EFB36224.1
KEGG: ava:Ava_2150 2.8e-16 response regulator receiver signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.862
EFB36178.1
Hypothetical protein; KEGG: chu:CHU_1557 1.5e-06 CHU large protein; uncharacterized K01238.
 
  0.857
EFB34128.1
Tetratricopeptide repeat protein.
 
 0.852
EFB35402.1
KEGG: bth:BT2089 3.1e-240 DNA topoisomerase III K03169; Psort location: Cytoplasmic, score: 8.96.
  
    0.825
EFB35473.1
PglZ domain protein; KEGG: bcl:ABC3884 7.3e-13 spo0F; stage 0 sporulation protein F K02490; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.818
EFB36875.1
Tetratricopeptide repeat protein.
  
  
 0.814
EFB36414.1
Hypothetical protein.
 
 
 0.811
EFB35166.1
Hypothetical protein.
  
 
   0.786
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.