STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35413.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46. (170 aa)    
Predicted Functional Partners:
EFB35414.1
Transporter, MotA/TolQ/ExbB proton channel family protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
    0.827
EFB35412.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
    0.742
EFB35411.1
Hypothetical protein; Overlaps another CDS with the same product name.
       0.732
EFB35410.1
Transcriptional regulator, AsnC family; Psort location: Cytoplasmic, score: 8.96.
       0.616
EFB35415.1
Hydrolase, TatD family; KEGG: bth:BT2056 2.2e-56 Mg-dependent DNase K03424; Psort location: Cytoplasmic, score: 8.96.
       0.571
EFB35416.1
Polyprenyl synthetase; KEGG: bfs:BF3533 9.3e-97 putative isoprenoid biosynthesis related protein K00787:K00795; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
       0.536
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.