STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35421.1Hypothetical protein. (354 aa)    
Predicted Functional Partners:
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.795
EFB36885.1
Hypothetical protein.
  
     0.746
EFB34928.1
Hypothetical protein.
  
     0.728
EFB35422.1
Alpha-2-macroglobulin family protein.
       0.697
EFB36156.1
Cna protein B-type domain protein; KEGG: ddi:DDB0230105 1.4e-06 putative CLK family kinase K08287; Psort location: OuterMembrane, score: 9.49.
  
     0.687
EFB35744.1
DNA-binding helix-turn-helix protein.
  
     0.648
EFB36579.1
Transporter, major facilitator family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.613
EFB34040.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.597
EFB36964.1
SpoIID/LytB domain protein; KEGG: sat:SYN_00250 6.5e-105 glycosyltransferase K00754.
  
     0.555
EFB36516.1
Hypothetical protein.
  
     0.552
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.