STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35428.1RmuC domain protein; KEGG: dre:317747 4.8e-05 rock2; rho-associated, coiled-coil containing protein kinase 2 K04514. (438 aa)    
Predicted Functional Partners:
EFB35429.1
KEGG: chu:CHU_3577 4.2e-149 bglX; b-glucosidase, glycoside hydrolase family 3 protein K01188; Psort location: Periplasmic, score: 9.44.
       0.449
EFB35427.1
KEGG: mta:Moth_0429 1.4e-141 mannitol dehydrogenase K00040.
       0.423
EFB34912.1
MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.420
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.