STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35434.1Cellulase (glycosyl hydrolase family 5); KEGG: sde:Sde_2636 3.2e-54 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (368 aa)    
Predicted Functional Partners:
EFB35423.1
Glycosyltransferase family 36; KEGG: vfi:VF2147 5.8e-120 N,N'-diacetylchitobiose phosphorylase K00754; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.897
EFB35432.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
     0.819
EFB35431.1
Hypothetical protein.
 
     0.790
EFB35849.1
Hypothetical protein.
   
  0.747
EFB35429.1
KEGG: chu:CHU_3577 4.2e-149 bglX; b-glucosidase, glycoside hydrolase family 3 protein K01188; Psort location: Periplasmic, score: 9.44.
    
  0.720
EFB34055.1
Glycosyl hydrolase, family 43; KEGG: pat:Patl_3728 4.2e-30 alpha-L-arabinofuranosidase K01209; Belongs to the glycosyl hydrolase 43 family.
  
     0.716
EFB34056.1
Glycosyl hydrolase, family 43; KEGG: chu:CHU_2041 1.3e-95 CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238.
  
     0.701
EFB36843.1
Hypothetical protein; KEGG: tma:TM1751 0.0033 endoglucanase K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.669
EFB34718.1
GDSL-like protein; KEGG: chu:CHU_0721 4.0e-25 hypothetical protein K01238.
 
  
  0.653
EFB35608.1
Glycosyl hydrolase, family 53; KEGG: sde:Sde_3710 1.9e-75 arabinogalactan endo-1,4-beta-galactosidase K01224.
 
  
 0.623
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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