STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35440.1O-Glycosyl hydrolase family 30; KEGG: bth:BT3312 1.5e-144 glucosylceramidase precursor K01201; Belongs to the glycosyl hydrolase 30 family. (515 aa)    
Predicted Functional Partners:
EFB35441.1
SusD family protein.
 
     0.915
EFB35442.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: Extracellular, score: 9.64.
 
     0.859
EFB35439.1
Hypothetical protein.
  
    0.735
EFB35437.1
Hypothetical protein.
 
     0.560
EFB35608.1
Glycosyl hydrolase, family 53; KEGG: sde:Sde_3710 1.9e-75 arabinogalactan endo-1,4-beta-galactosidase K01224.
  
  
 0.508
EFB36843.1
Hypothetical protein; KEGG: tma:TM1751 0.0033 endoglucanase K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.503
EFB35342.1
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: xcv:XCV4356 6.3e-124 bga2; beta-galactosidase K01190; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.456
EFB36837.1
Hypothetical protein; KEGG: bfr:BF0846 3.2e-32 mannan endo-1,4-beta-mannosidase K01218; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.442
EFB35438.1
Hypothetical protein.
       0.424
EFB35343.1
Glycosyl hydrolase, family 31; KEGG: aba:Acid345_0898 2.4e-139 alpha-glucosidase K01187; Belongs to the glycosyl hydrolase 31 family.
  
  
 0.419
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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