STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35459.1Transporter, major facilitator family protein; Psort location: CytoplasmicMembrane, score: 10.00. (487 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
     
 0.649
EFB35461.1
PTS system Galactitol-specific IIC component; KEGG: stt:t1523 5.3e-78 putative phosphotransferase enzyme K02775; Psort location: CytoplasmicMembrane, score: 10.00.
       0.615
EFB34888.1
L-rhamnose-proton symport protein (RhaT); Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.523
EFB36175.1
Transporter, major facilitator family protein; KEGG: tpe:Tpen_1087 0.0016 proton-translocating NADH-quinone oxidoreductase, chain L; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.490
EFB36480.1
Transporter, major facilitator family protein; KEGG: eci:UTI89_C5041 5.3e-07 yjiJ; hypothetical protein YjiJ K00403; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.435
EFB36491.1
KDPG and KHG aldolase; KEGG: bth:BT0489 1.2e-82 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase K01625:K01650; Psort location: Cytoplasmic, score: 9.26.
 
   
 0.429
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
   
   0.414
EFB34171.1
Carbohydrate kinase, FGGY family protein; KEGG: bth:BT0792 2.4e-192 xylulose kinase (xylulokinase) K00854.
 
     0.405
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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