STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35482.1KEGG: bfs:BF0632 2.1e-58 putative biotin/lipoate A/B protein ligase family protein K01947. (246 aa)    
Predicted Functional Partners:
EFB36688.1
Biotin-requiring enzyme; KEGG: bth:BT1688 8.1e-27 bccP; biotin carboxyl carrier protein (BCCP) K01606.
 
  
 0.970
EFB36562.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
 0.958
EFB36280.1
Carboxyl transferase domain protein; KEGG: bfr:BF3289 3.6e-214 propionyl-CoA carboxylase beta chain K01966; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.956
EFB36282.1
Biotin-requiring enzyme; KEGG: bth:BT1688 1.1e-31 bccP; biotin carboxyl carrier protein (BCCP) K01606.
 
 
 
 0.903
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
    0.788
EFB35483.1
Putative TIGR00252 family protein; KEGG: sat:SYN_00772 2.7e-12 endonuclease; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0102 family.
       0.751
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.729
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.681
fabD
[acyl-carrier-protein] S-malonyltransferase; KEGG: bth:BT0789 1.2e-121 malonyl CoA-acyl carrier protein transacylase K00645; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.659
fabF
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
   
 0.605
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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