STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35483.1Putative TIGR00252 family protein; KEGG: sat:SYN_00772 2.7e-12 endonuclease; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0102 family. (125 aa)    
Predicted Functional Partners:
EFB35482.1
KEGG: bfs:BF0632 2.1e-58 putative biotin/lipoate A/B protein ligase family protein K01947.
       0.751
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.669
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.632
EFB35236.1
Mg chelatase-like protein; KEGG: chu:CHU_0354 2.9e-166 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.471
EFB35306.1
Hypothetical protein; KEGG: chu:CHU_0354 2.5e-39 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.448
EFB35523.1
DHHA1 domain protein; KEGG: sat:SYN_00533 3.9e-07 tRNA nucleotidyltransferase.
  
     0.428
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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