STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadACytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (148 aa)    
Predicted Functional Partners:
EFB35482.1
KEGG: bfs:BF0632 2.1e-58 putative biotin/lipoate A/B protein ligase family protein K01947.
 
    0.788
hisE
phosphoribosyl-ATP diphosphatase; KEGG: bth:BT1377 9.6e-79 phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase K01496:K01523; Psort location: Cytoplasmic, score: 9.26; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.750
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.739
EFB35483.1
Putative TIGR00252 family protein; KEGG: sat:SYN_00772 2.7e-12 endonuclease; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0102 family.
       0.669
EFB36798.1
Glycerate kinase; KEGG: bth:BT1437 1.4e-72 glycerate kinase K00865; Belongs to the glycerate kinase type-1 family.
 
 
    0.637
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
 0.556
xth
Exodeoxyribonuclease III; KEGG: lsa:LSA1338 1.9e-98 exoA; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.548
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
      0.519
EFB35272.1
KEGG: pgi:PG0752 4.5e-65 uracil phosphoribosyltransferase, putative K00761.
   
 0.469
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.449
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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