STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35485.1Hypothetical protein; KEGG: ptr:470307 0.00018 ROCK2, LOC470307; Rho-associated, coiled-coil containing protein kinase 2 K04514. (285 aa)    
Predicted Functional Partners:
EFB36817.1
Hypothetical protein.
  
     0.707
EFB33863.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 9.49.
  
     0.698
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.697
EFB36492.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dvu:DVU2587 1.2e-13 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.46.
 
  
  0.695
EFB36952.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.691
EFB35232.1
Hypothetical protein.
  
     0.690
EFB35488.1
Hypothetical protein; KEGG: tbd:Tbd_2668 7.7e-21 phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase K01923; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.675
EFB36883.1
Cyclic nucleotide-binding domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.627
EFB34040.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.593
EFB34548.1
Positive regulator of sigma(E), RseC/MucC.
  
     0.591
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.