STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdkThymidine kinase; KEGG: bfr:BF0659 2.6e-78 thymidine kinase K00857; Psort location: Cytoplasmic, score: 8.96. (194 aa)    
Predicted Functional Partners:
EFB33659.1
KEGG: bfr:BF1494 2.8e-40 cytidine deaminase K01489.
 
  
 0.956
dut
dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
   
 
 0.953
thyX
Thymidylate synthase ThyX; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
    
 0.913
EFB34378.1
Ser/Thr phosphatase family protein; KEGG: rsp:RSP_0955 1.5e-29 5'-nucleotidase K01081; Psort location: Periplasmic, score: 9.44.
 
  
  0.900
EFB36881.1
Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: bfr:BF0964 1.9e-57 deoxycytidylate deaminase K01493.
  
 
 0.899
EFB36462.1
Phosphorylase family; KEGG: bfr:BF1175 2.9e-109 purine nucleoside phosphorylase II K00757; Psort location: Cytoplasmic, score: 8.96.
     
 0.887
EFB36898.1
Inosine guanosine and xanthosine phosphorylase family; KEGG: bfs:BF3274 1.4e-79 punA, deoD, pnp; putative purine nucleoside phosphorylase I K03783; Psort location: Cytoplasmic, score: 8.96.
    
  0.880
EFB35488.1
Hypothetical protein; KEGG: tbd:Tbd_2668 7.7e-21 phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase K01923; Psort location: CytoplasmicMembrane, score: 10.00.
       0.800
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
  
 0.739
EFB36832.1
KEGG: sru:SRU_1265 7.8e-61 deoxynucleoside kinase subfamily, putative K00924; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.720
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.