STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35489.1KEGG: ftf:FTF0610 3.3e-30 DNA/RNA endonuclease family protein K01173; Psort location: Extracellular, score: 9.71. (302 aa)    
Predicted Functional Partners:
EFB36057.1
Metallo-beta-lactamase domain protein; KEGG: bja:blr3882 9.2e-11 ribonuclease Z K00784; Psort location: Cytoplasmic, score: 8.96.
   
   0.707
rnz
Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
   
   0.707
EFB35189.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
     0.587
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.535
EFB33671.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 5.7e-145 NADH dehydrogenase K00359; Psort location: Cytoplasmic, score: 9.26; Belongs to the sulfur carrier protein TusA family.
    
 
 0.495
EFB36827.1
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; KEGG: bth:BT4065 2.0e-149 NADH dehydrogenase I, chain D K00332:K00333; Psort location: Cytoplasmic, score: 8.96.
   
   0.448
EFB35947.1
Hypothetical protein; KEGG: bth:BT3982 6.2e-139 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K01144.
 
     0.433
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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