STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35498.1Cell cycle protein, FtsW/RodA/SpoVE family; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family. (487 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2; KEGG: cph:Cpha266_0817 7.6e-79 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 8.02.
 
 0.974
EFB35502.1
Cell shape determining protein, MreB/Mrl family; KEGG: hpa:HPAG1_1318 1.3e-67 rod shape-determining protein K01529; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.908
EFB35643.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: bfr:BF0311 3.6e-191 penicillin-binding protein K03587; Psort location: CytoplasmicMembrane, score: 8.02.
 
 
 0.879
mreC
Rod shape-determining protein MreC.
 
  
 0.850
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.774
EFB35650.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.736
EFB36141.1
Transglycosylase; KEGG: chu:CHU_3131 9.4e-168 ponA; bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, glycosyltransferase family 51 protein.
  
 
 
 0.720
EFB36209.1
Transglycosylase; KEGG: bfs:BF2276 2.7e-257 putative penicillin-binding peptidoglycan biosynthesis-related exported protein K05366.
  
   
 0.705
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.678
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.666
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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