STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35508.1Hypothetical protein. (703 aa)    
Predicted Functional Partners:
EFB35507.1
Hypothetical protein.
 
    0.881
EFB36367.1
Alpha-L-arabinofuranosidase domain protein; KEGG: bth:BT0348 8.0e-210 alpha-L-arabinofuranosidase K01209; Psort location: Cytoplasmic, score: 9.26.
 
     0.686
EFB35127.1
Hypothetical protein.
 
     0.586
EFB35509.1
Hypothetical protein; KEGG: xcb:XC_1002 1.2e-23 alpha-glucosidase K01187.
       0.501
EFB35657.1
Hypothetical protein.
  
     0.449
EFB34057.1
Hypothetical protein.
  
     0.433
EFB34024.1
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: aba:Acid345_0579 4.3e-05 beta-glucuronidase K01195; Psort location: Cytoplasmic, score: 8.96.
  
     0.431
EFB35757.1
Hypothetical protein; KEGG: sus:Acid_2992 1.2e-64 alpha-N-arabinofuranosidase K01209.
 
     0.430
EFB34675.1
Carbohydrate binding domain protein; KEGG: sus:Acid_2992 7.2e-90 alpha-N-arabinofuranosidase K01209.
 
     0.426
rhaB
Rhamnulokinase; KEGG: bth:BT3763 1.3e-154 rhamnulose kinase/L-fuculose kinase K00848.
  
     0.422
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.