STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35514.1Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (552 aa)    
Predicted Functional Partners:
EFB34455.1
Lactate/malate dehydrogenase, NAD binding domain protein; KEGG: pgi:PG1949 2.3e-109 mdh; malate dehydrogenase K00026; Psort location: Cytoplasmic, score: 9.26; Belongs to the LDH/MDH superfamily.
  
 
 0.998
sdhA
KEGG: bth:BT3054 0. succinate dehydrogenase flavoprotein subunit K00239.
  
 
 0.996
EFB34335.1
KEGG: bth:BT3055 5.6e-106 succinate dehydrogenase iron-sulfur protein K00240; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.983
EFB35773.1
KEGG: bfs:BF3541 3.9e-178 putative citrate synthase K01647; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.979
EFB34669.1
Isocitrate dehydrogenase, NADP-dependent; KEGG: tte:TTE0387 1.9e-153 icd; Isocitrate dehydrogenases K00031; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
  
 0.968
EFB34565.1
Phosphate acetyl/butyryl transferase; KEGG: bfs:BF3408 0. maeB; putative NADP-dependent malic enzyme K00029; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.968
sdhC
Succinate dehydrogenase cytochrome B subunit, b558 family; KEGG: bfs:BF4339 8.9e-76 fumarate reductase transmembrane cytochrome b subunit K00241; Psort location: CytoplasmicMembrane, score: 10.00.
    
 0.947
pta
KEGG: bth:BT3692 3.8e-116 phosphate acetyltransferase K00625.
  
 
 0.904
EFB35168.1
FAH family protein; KEGG: chu:CHU_1891 2.2e-49 ycgM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, fumarylacetoacetate hydrolase family K01828; Psort location: Cytoplasmic, score: 8.96.
    
  0.885
argH
KEGG: bfr:BF0512 1.3e-193 argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 8.96.
    
 0.879
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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