STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35105.1Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96. (428 aa)    
Predicted Functional Partners:
EFB33727.1
KEGG: tel:tlr1749 4.9e-68 fus; translation elongation factor EF-G K02355; Psort location: Cytoplasmic, score: 9.26.
  
    0.742
EFB36326.1
Hypothetical protein.
  
     0.640
EFB35700.1
Hypothetical protein.
   
   0.617
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
   0.617
EFB34254.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: pgi:PG0368 1.7e-214 DNA topoisomerase IV, B subunit, putative K02622; Psort location: Cytoplasmic, score: 8.96.
   
   0.617
EFB34076.1
Hypothetical protein; KEGG: bth:BT1765 9.2e-27 levanase precursor (2,6-beta-D-fructofuranosidase) K01238.
  
     0.590
EFB34795.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.583
EFB35106.1
Hypothetical protein.
       0.486
EFB35107.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.486
EFB35108.1
Hypothetical protein.
       0.486
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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