STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35147.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (479 aa)    
Predicted Functional Partners:
EFB35146.1
GtrA-like protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.753
EFB35144.1
HAD phosphoserine phosphatase-like hydrolase, family IB; KEGG: ctc:CTC01739 4.8e-13 phosphoserine phosphatase K01079.
       0.545
EFB35145.1
Acyltransferase; KEGG: lsl:LSL_1527 0.0015 O-acetyl transferase K00680; Psort location: CytoplasmicMembrane, score: 10.00.
       0.529
EFB35143.1
Prenyltransferase, UbiA family; KEGG: ctc:CTC01291 3.4e-44 hypothetical protein K00810; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the UbiA prenyltransferase family.
       0.423
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.