STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35153.1LICD family protein; KEGG: spn:SP_1273 3.3e-30 licD1 protein K07271; Psort location: Cytoplasmic, score: 8.96. (289 aa)    
Predicted Functional Partners:
EFB35154.1
NAD dependent epimerase/dehydratase family protein; KEGG: pfu:PF1357 1.7e-35 UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase K01710; Psort location: Cytoplasmic, score: 8.96.
 
     0.604
EFB35152.1
Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.563
EFB35155.1
KEGG: bth:BT2881 5.0e-98 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
 
   
 0.534
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.