STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35175.1Hypothetical protein; KEGG: rfe:RF_1094 4.2e-07 6-pyruvoyl tetrahydropterin synthase K01737; Psort location: Cytoplasmic, score: 8.96. (188 aa)    
Predicted Functional Partners:
folE
GTP cyclohydrolase I; KEGG: bfs:BF3727 5.1e-73 folE, mtrA; GTP cyclohydrolase I K01495; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.906
EFB34360.1
Hypothetical protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
  
 
 0.891
queC
Protein ExsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
  
  
 0.842
EFB35176.1
Transcriptional regulator, Fur family; Belongs to the Fur family.
 
     0.802
queF
preQ(1) synthase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
  
  
 0.771
EFB35733.1
Dinuclear metal center protein, YbgI family; Psort location: Cytoplasmic, score: 8.96.
    
 0.756
EFB36883.1
Cyclic nucleotide-binding domain protein; Psort location: Cytoplasmic, score: 8.96.
 
  
  0.741
EFB34645.1
Hypothetical protein.
  
  
 0.722
EFB36919.1
Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 9.2e-05 crp; CRP-cAMP transcriptional dual regulator K00924; Psort location: Cytoplasmic, score: 8.96.
    
  0.706
EFB36203.1
Cyclic nucleotide-binding domain protein; Psort location: Cytoplasmic, score: 8.96.
    
  0.706
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.