STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35189.1Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. (176 aa)    
Predicted Functional Partners:
argS
arginine--tRNA ligase; KEGG: bfr:BF4421 1.3e-239 arginyl-tRNA synthetase K01887; Psort location: Cytoplasmic, score: 9.26.
       0.660
EFB35489.1
KEGG: ftf:FTF0610 3.3e-30 DNA/RNA endonuclease family protein K01173; Psort location: Extracellular, score: 9.71.
  
     0.587
EFB36455.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.578
EFB36684.1
Sporulation and cell division repeat protein.
  
     0.570
EFB35353.1
Hypothetical protein.
  
     0.528
gldH
Gliding motility-associated lipoprotein GldH; Psort location: Cytoplasmic, score: 8.96.
  
     0.496
EFB36166.1
YbbR-like protein.
  
     0.488
EFB36815.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.487
EFB36128.1
DNA/RNA non-specific endonuclease; KEGG: bbu:BB0411 1.3e-13 nucA; endonuclease precursor K01173.
  
     0.422
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.