STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35195.1Hypothetical protein; KEGG: xac:XAC3313 1.1e-39 susB; alpha-glucosidase K01187. (653 aa)    
Predicted Functional Partners:
EFB34042.1
Hypothetical protein; KEGG: chu:CHU_2041 8.2e-71 CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238.
 
     0.662
EFB34370.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
  
     0.654
EFB34371.1
SusD family protein.
  
     0.652
EFB34369.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
     0.613
EFB34367.1
Putative glycosyl hydrolase family 10; KEGG: sde:Sde_2934 2.4e-14 endo-1,4-beta-xylanase K01181.
  
     0.610
EFB35610.1
SusD family protein.
 
    0.590
EFB34696.1
SusD family protein.
 
    0.587
EFB34372.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.581
EFB36937.1
Glycosyl hydrolase, family 88; KEGG: tma:TM0437 3.0e-75 exo-poly-alpha-D-galacturonosidase, putative K01238; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
  
 
 0.566
EFB34368.1
Hypothetical protein.
  
     0.560
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.