STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35197.1Putative endoribonuclease L-PSP; KEGG: ape:APE_1501.1 5.0e-27 ribonuclease UK114. (124 aa)    
Predicted Functional Partners:
ilvA
KEGG: tma:TM0356 4.4e-106 threonine dehydratase catabolic K01754; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.822
EFB35751.1
Putative 3-deoxy-7-phosphoheptulonate synthase; KEGG: bfs:BF3717 1.6e-142 putative chorismate mutase K04516:K03856; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.712
EFB35198.1
KEGG: bfr:BF2194 1.1e-68 iron(III) ABC transporter ATP-binding protein K02013; Psort location: Cytoplasmic, score: 9.12.
       0.605
EFB35777.1
KEGG: bfs:BF3636 0. putative elongation factor G K02355; Psort location: Cytoplasmic, score: 9.97.
    
  0.603
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
  0.603
EFB33727.1
KEGG: tel:tlr1749 4.9e-68 fus; translation elongation factor EF-G K02355; Psort location: Cytoplasmic, score: 9.26.
    
  0.603
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
 0.503
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
   0.475
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
    
  0.427
EFB35093.1
Isochorismatase family protein; KEGG: sto:ST0582 3.6e-24 isochorismatase K05993.
  
 
 0.421
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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