STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35217.1Nucleotidyltransferase domain protein; KEGG: ctc:CTC01415 0.0010 nucleotidyltransferase. (106 aa)    
Predicted Functional Partners:
EFB35218.1
HEPN domain protein.
 
     0.944
EFB35600.1
KEGG: ehi:224.t00010 6.0e-09 leucine rich repeat protein K01768.
  
    0.636
EFB35603.1
SusD family protein.
  
     0.582
EFB35216.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: nwi:Nwi_1446 1.7e-11 ntrY; nitrogen regulatory signal transduction histidine kinase NtrY; Psort location: CytoplasmicMembrane, score: 7.88.
       0.556
EFB35690.1
Hypothetical protein.
  
     0.539
EFB35107.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.528
EFB36376.1
Hypothetical protein.
 
     0.514
EFB35215.1
Sigma-54 interaction domain protein; KEGG: eci:UTI89_C2502 6.9e-69 atoC; acetoacetate metabolism regulatory protein AtoC K07714; Psort location: Cytoplasmic, score: 8.96.
       0.476
EFB34132.1
Zinc-dependent metalloproteinase lipoprotein, BF0631 family.
  
     0.442
EFB35721.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.414
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.