STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35222.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46. (376 aa)    
Predicted Functional Partners:
EFB35220.1
KEGG: pen:PSEEN3665 0.0028 efflux ABC transporter, ATP-binding/permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
     0.986
EFB35219.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: cch:Cag_0988 1.7e-51 ATPase K02003; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.935
EFB35223.1
Efflux transporter, RND family, MFP subunit; KEGG: fnu:FN0522 0.0087 exonuclease SBCC K03546; Psort location: CytoplasmicMembrane, score: 8.02.
 
 
   0.913
EFB35216.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: nwi:Nwi_1446 1.7e-11 ntrY; nitrogen regulatory signal transduction histidine kinase NtrY; Psort location: CytoplasmicMembrane, score: 7.88.
 
    0.767
EFB35224.1
Psort location: OuterMembrane, score: 10.00.
 
     0.754
EFB36236.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1291 2.7e-19 ABC transporter component K06021; Psort location: CytoplasmicMembrane, score: 7.88.
  
 0.743
EFB34996.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0337 5.6e-51 ATPase K06020; Psort location: CytoplasmicMembrane, score: 7.88.
  
 0.743
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 0.743
EFB36414.1
Hypothetical protein.
   
 
 0.655
EFB34892.1
Peptidase, M56 family; Psort location: CytoplasmicMembrane, score: 9.46.
 
     0.634
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.