STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argHKEGG: bfr:BF0512 1.3e-193 argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 8.96. (445 aa)    
Predicted Functional Partners:
EFB35542.1
KEGG: bth:BT3760 5.2e-174 argininosuccinate synthase K01940; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.993
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
 
 
 0.957
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
 
  
 0.933
argF
KEGG: bth:BT3717 5.1e-128 ornithine carbamoyltransferase K00611; Psort location: Cytoplasmic, score: 9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.933
EFB35544.1
Aminotransferase, class III; KEGG: bfs:BF0479 1.3e-147 argD; putative acetylornithine aminotransferase K00818; Psort location: Cytoplasmic, score: 8.96; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.927
EFB35540.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.881
EFB35514.1
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.879
purB
KEGG: bfr:BF4018 7.8e-196 adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 8.96.
    
 0.825
EFB35622.1
Peptidase dimerization domain protein; KEGG: chu:CHU_3087 1.5e-91 argE; acetylornithine deacetylase K01438; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.816
EFB35232.1
Hypothetical protein.
       0.800
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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