STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35239.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
rpmC
Ribosomal protein L29; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.701
EFB35525.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 9.49.
  
 
   0.663
EFB35240.1
Hypothetical protein.
       0.655
EFB35951.1
Hypothetical protein.
  
     0.556
EFB34464.1
Gram-positive signal peptide protein, YSIRK family.
  
     0.528
EFB34341.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.505
EFB35403.1
OmpA family protein; Psort location: OuterMembrane, score: 9.92.
  
 
 0.494
EFB35463.1
GSCFA family protein.
  
     0.494
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
   0.467
EFB36473.1
Tetratricopeptide repeat protein.
    
 
 0.459
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.