STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35248.1Endonuclease/exonuclease/phosphatase family protein. (365 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.894
EFB35249.1
KEGG: sru:SRU_0683 6.9e-14 peptidase, S54 (rhomboid) family, putative; Psort location: CytoplasmicMembrane, score: 9.46.
       0.824
EFB36599.1
Hypothetical protein.
  
     0.716
EFB35135.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.704
EFB34945.1
Putative ACR, COG1399; Psort location: Cytoplasmic, score: 8.96.
  
     0.694
EFB36516.1
Hypothetical protein.
  
     0.692
EFB34040.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.690
mreD
Rod shape-determining protein MreD; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.678
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
 0.647
EFB35650.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.636
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.