STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemDKEGG: chu:CHU_0169 6.3e-59 hemD; uroporphyrinogen-III synthase K01719. (249 aa)    
Predicted Functional Partners:
rnpA
Putative ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.879
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.844
EFB35256.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.824
EFB35253.1
Conserved hypothetical protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.784
EFB34190.1
Hypothetical protein.
  
     0.762
EFB36859.1
KEGG: sat:SYN_00150 7.5e-17 heme export protein apocytochrome heme-lyase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.744
EFB36169.1
Hypothetical protein.
  
     0.735
EFB35135.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.727
EFB35739.1
Type I restriction enzyme HsdR protein N-terminal domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.726
EFB34970.1
GH3 auxin-responsive promoter.
  
     0.710
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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