STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35264.1Outer membrane protein. (184 aa)    
Predicted Functional Partners:
EFB35270.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
  
 0.836
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.824
EFB36176.1
Hypothetical protein.
  
 
   0.822
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.758
EFB35269.1
Hypothetical protein.
 
 
   0.755
EFB33822.1
Sodium bile acid symporter family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.714
EFB36599.1
Hypothetical protein.
  
     0.700
EFB36305.1
Hypothetical protein.
  
     0.694
EFB35267.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 10.00.
  
  
 0.691
EFB34101.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.659
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.