STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35267.1Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 10.00. (878 aa)    
Predicted Functional Partners:
EFB35266.1
Outer membrane protein.
 
  
 0.955
yfiO
Outer membrane assembly lipoprotein YfiO.
 
 
 0.922
EFB35270.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
 
 0.919
EFB35265.1
Outer membrane protein; KEGG: rno:309804 0.0088 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208.
 
  
 0.867
EFB35269.1
Hypothetical protein.
 
 
   0.814
EFB35261.1
KEGG: pen:PSEEN3042 2.3e-06 macB; macrolide ABC efflux protein MacB; Psort location: CytoplasmicMembrane, score: 9.46.
 
   
 0.794
EFB34929.1
PPIC-type PPIASE domain protein; KEGG: bth:BT3848 2.0e-140 peptidyl-prolyl cis-trans isomerase K03771.
  
 
 0.793
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.784
EFB35368.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.760
lepB
KEGG: bth:BT3319 2.7e-145 signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S26 family.
  
  
 0.749
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.