STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35269.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
EFB35270.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
    0.912
EFB35266.1
Outer membrane protein.
 
 
   0.869
EFB35403.1
OmpA family protein; Psort location: OuterMembrane, score: 9.92.
 
 
 0.864
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.824
EFB35267.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 10.00.
 
 
   0.814
EFB34059.1
Hypothetical protein.
 
   
 0.772
EFB34128.1
Tetratricopeptide repeat protein.
  
     0.763
EFB33839.1
Hypothetical protein.
  
     0.763
gldL
Gliding motility-associated protein GldL.
  
     0.760
EFB34469.1
Bacteroidetes-specific putative membrane protein.
  
     0.760
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.