STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35286.1Hypothetical protein. (574 aa)    
Predicted Functional Partners:
EFB34759.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.766
EFB35287.1
Hypothetical protein.
       0.701
EFB35285.1
Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; KEGG: bth:BT2152 5.1e-57 putative acetyltransferase K02517; Psort location: Cytoplasmic, score: 8.96.
       0.610
EFB36756.1
Single-strand binding family protein.
  
     0.600
EFB35288.1
Hypothetical protein; KEGG: lsl:LSL_0694 2.6e-37 galactofuranosyltransferase K00754.
       0.580
EFB35560.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.531
EFB35284.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_1482 2.8e-97 ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.
       0.508
EFB35282.1
PAP2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.416
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
   
   0.408
EFB35075.1
Hypothetical protein; Catalyzes the cleavage of the N-glycosidic bond of deoxyribonucleoside 5'-monophosphates to yield deoxyribose 5-phosphate and a purine or pyrimidine base; Belongs to the 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 family.
   
   0.408
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.