STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35289.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (325 aa)    
Predicted Functional Partners:
EFB34180.1
Alpha amylase, catalytic domain protein; KEGG: bfr:BF2243 0. 1,4-alpha-glucan branching enzyme K00700; Psort location: Cytoplasmic, score: 8.96.
   
 0.625
EFB34529.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 1.0e-67 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100.
  
 
 0.538
EFB33879.1
Gram-positive signal peptide protein, YSIRK family; KEGG: tde:TDE0187 0.00017 carboxylesterase, putative K03928.
    
   0.514
gmhB
D,D-heptose 1,7-bisphosphate phosphatase; KEGG: tfu:Tfu_1394 7.4e-39 mannose-1-phosphate guanylyltransferase / phosphomannomutase K00966:K01840; Psort location: Cytoplasmic, score: 8.96.
  
 0.514
EFB35020.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.496
EFB36907.1
KEGG: gka:GK3304 5.3e-126 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809.
  
 
 0.483
EFB33751.1
Tat pathway signal sequence domain protein.
  
     0.477
rfbB
KEGG: bth:BT0466 1.2e-169 dTDP-glucose 4,6-dehydratase K01710.
   
 
 0.446
EFB35285.1
Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; KEGG: bth:BT2152 5.1e-57 putative acetyltransferase K02517; Psort location: Cytoplasmic, score: 8.96.
    
 0.444
EFB35812.1
DNA-binding helix-turn-helix protein.
  
     0.437
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.