STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35307.1DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.96. (153 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
     
 0.836
EFB34847.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
    
  0.785
EFB35306.1
Hypothetical protein; KEGG: chu:CHU_0354 2.5e-39 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB33883.1
Hypothetical protein.
  
     0.633
EFB36536.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.601
EFB33990.1
Relaxase/mobilization nuclease domain protein.
  
     0.537
EFB34571.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.503
EFB33961.1
Antioxidant, AhpC/TSA family; KEGG: reh:H16_A0306 0.00069 bcp; peroxiredoxin K00435.
  
     0.479
EFB35304.1
Group II intron, maturase-specific domain protein; KEGG: pol:Bpro_5394 4.3e-08 RNA-directed DNA polymerase K00986.
       0.427
EFB35305.1
Hypothetical protein; KEGG: pol:Bpro_5394 1.3e-28 RNA-directed DNA polymerase K00986; Psort location: Cytoplasmic, score: 8.96.
       0.427
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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