STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35048.1KEGG: bth:BT2976 4.0e-57 FKBP-type peptidyl-prolyl cis-trans isomerase, outer membrane protein precursor K03773; Psort location: OuterMembrane, score: 9.92. (200 aa)    
Predicted Functional Partners:
EFB36548.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: eci:UTI89_C0501 4.4e-67 htpG; chaperone HSP90, heat shock protein C 62.5 K04079; Psort location: Cytoplasmic, score: 9.26.
   
 0.795
EFB35047.1
Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: bth:BT2977 9.2e-90 peptidylprolyl isomerase K01802; Psort location: OuterMembrane, score: 9.92.
 
    
0.707
EFB35046.1
Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: bth:BT2977 6.0e-54 peptidylprolyl isomerase K01802; Psort location: OuterMembrane, score: 9.92.
 
    
0.664
EFB35049.1
Transcriptional regulator, Sir2 family; KEGG: bth:BT2975 4.9e-75 NAD-dependent deacetylase K01463.
       0.630
EFB33839.1
Hypothetical protein.
    
   0.582
EFB36473.1
Tetratricopeptide repeat protein.
   
 0.553
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
   
   0.485
EFB36550.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.471
EFB34812.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.471
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.471
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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