STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34996.1ABC transporter, ATP-binding protein; KEGG: cch:Cag_0337 5.6e-51 ATPase K06020; Psort location: CytoplasmicMembrane, score: 7.88. (238 aa)    
Predicted Functional Partners:
EFB34998.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 2.5e-35 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00.
 0.996
EFB34997.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 3.2e-21 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00.
 0.983
EFB34999.1
Efflux transporter, RND family, MFP subunit; KEGG: sai:Saci_0839 0.0066 reverse gyrase K03170; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.921
EFB36609.1
KEGG: rru:Rru_A3236 4.3e-14 hypothetical protein K06020.
 0.853
EFB36200.1
KEGG: pen:PSEEN3665 4.0e-08 efflux ABC transporter, ATP-binding/permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.774
EFB35220.1
KEGG: pen:PSEEN3665 0.0028 efflux ABC transporter, ATP-binding/permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.743
EFB35222.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
 0.743
EFB35261.1
KEGG: pen:PSEEN3042 2.3e-06 macB; macrolide ABC efflux protein MacB; Psort location: CytoplasmicMembrane, score: 9.46.
  
 0.743
EFB36414.1
Hypothetical protein.
   
 
 0.667
EFB35516.1
KEGG: pen:PSEEN2819 7.0e-44 ABC efflux transporter, permease/ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.
    
0.634
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.