STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34998.1Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 2.5e-35 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00. (415 aa)    
Predicted Functional Partners:
EFB34996.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0337 5.6e-51 ATPase K06020; Psort location: CytoplasmicMembrane, score: 7.88.
 0.996
EFB35219.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: cch:Cag_0988 1.7e-51 ATPase K02003; Psort location: CytoplasmicMembrane, score: 7.88.
 0.987
EFB34999.1
Efflux transporter, RND family, MFP subunit; KEGG: sai:Saci_0839 0.0066 reverse gyrase K03170; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.974
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 0.971
EFB36677.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_1444 3.1e-41 ATPase K02003; Psort location: CytoplasmicMembrane, score: 7.88.
 
      0.774
EFB34997.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 3.2e-21 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
0.756
EFB34475.1
KEGG: stc:str1502 3.9e-82 gnlQ; glutamine ABC transporter ATP-binding protein K02028; Psort location: CytoplasmicMembrane, score: 7.88.
 
      0.744
EFB36236.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1291 2.7e-19 ABC transporter component K06021; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.710
EFB34939.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2909 8.1e-43 ABC transporter component K02065.
 
      0.665
EFB35223.1
Efflux transporter, RND family, MFP subunit; KEGG: fnu:FN0522 0.0087 exonuclease SBCC K03546; Psort location: CytoplasmicMembrane, score: 8.02.
 
 
 0.608
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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