STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34999.1Efflux transporter, RND family, MFP subunit; KEGG: sai:Saci_0839 0.0066 reverse gyrase K03170; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (372 aa)    
Predicted Functional Partners:
EFB36510.1
Psort location: OuterMembrane, score: 9.92.
  
 0.980
EFB34998.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 2.5e-35 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.974
czcA
Heavy metal efflux pump, CzcA family; KEGG: eci:UTI89_C2351 5.5e-76 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.969
EFB34997.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 3.2e-21 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.960
EFB34996.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0337 5.6e-51 ATPase K06020; Psort location: CytoplasmicMembrane, score: 7.88.
 
 
 0.921
EFB34143.1
RND transporter, HAE1 family; KEGG: eci:UTI89_C2351 2.4e-114 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.830
EFB36609.1
KEGG: rru:Rru_A3236 4.3e-14 hypothetical protein K06020.
 
 
 0.702
EFB36608.1
Outer membrane efflux protein; KEGG: dre:317747 0.0014 rock2; rho-associated, coiled-coil containing protein kinase 2 K04514; Psort location: OuterMembrane, score: 10.00.
 
  0.677
EFB35224.1
Psort location: OuterMembrane, score: 10.00.
 
  0.657
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
   
   0.638
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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