STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34958.1CotH protein. (541 aa)    
Predicted Functional Partners:
EFB34959.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
EFB34159.1
Hypothetical protein; KEGG: chu:CHU_0834 8.9e-07 CHU large protein K01238.
  
  
  0.712
EFB34960.1
Glycosyltransferase, group 2 family protein; KEGG: fth:FTH_1386 2.2e-26 glycosyltransferase K00754.
       0.631
EFB34961.1
Glycosyltransferase, group 2 family protein; KEGG: bce:BC5267 1.0e-19 glycosyltransferase K00754.
       0.631
EFB34957.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.603
EFB34956.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.576
EFB34962.1
Hypothetical protein.
       0.560
EFB36070.1
TonB-dependent receptor; KEGG: shn:Shewana3_2312 1.2e-12 1-(5-phosphoribosyl)-5- K01814; Psort location: OuterMembrane, score: 9.49.
  
     0.540
EFB36071.1
Hypothetical protein.
  
     0.531
EFB35788.1
Hypothetical protein.
  
     0.530
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.