STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nadAQuinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. (333 aa)    
Predicted Functional Partners:
nadC
Nicotinate-nucleotide diphosphorylase (carboxylating); KEGG: bfs:BF1400 3.3e-117 nadC; putative nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) K00767; Psort location: Cytoplasmic, score: 9.97; Belongs to the NadC/ModD family.
 
 
 0.999
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
 0.999
EFB36363.1
Hydrolase, NUDIX family; KEGG: mma:MM1399 2.0e-11 MutT-like protein K01529.
 
  
 0.727
pnuC
Nicotinamide mononucleotide transporter PnuC; Psort location: CytoplasmicMembrane, score: 9.46.
  
  
 0.706
valS
valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
      0.678
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
    0.587
EFB35359.1
Putative serine O-acetyltransferase; KEGG: bth:BT3256 2.2e-104 serine acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.97.
  
    0.517
EFB35157.1
KEGG: msm:MSMEG_5947 8.2e-18 cysE; serine O-acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.26.
  
    0.517
sdhA
KEGG: bth:BT3054 0. succinate dehydrogenase flavoprotein subunit K00239.
    
 0.486
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.472
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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