STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34970.1GH3 auxin-responsive promoter. (502 aa)    
Predicted Functional Partners:
EFB34972.1
Hypothetical protein.
 
  
  0.799
EFB36648.1
Chain length determinant protein; KEGG: pgi:PG0436 5.2e-103 capsular polysaccharide transport protein, putative K00903; Psort location: CytoplasmicMembrane, score: 9.82.
    
  0.740
EFB34190.1
Hypothetical protein.
 
     0.736
hemD
KEGG: chu:CHU_0169 6.3e-59 hemD; uroporphyrinogen-III synthase K01719.
  
     0.710
EFB34971.1
Hypothetical protein.
       0.693
EFB35135.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.665
EFB35739.1
Type I restriction enzyme HsdR protein N-terminal domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.634
EFB35576.1
PASTA domain protein; KEGG: mbo:Mb0014c 9.7e-08 pknB; transmembrane serine/threonine-protein kinase B PknB (protein kinase B) (StpK B) K08884; Psort location: Cytoplasmic, score: 8.96.
  
     0.589
EFB36903.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: csa:Csal_1693 6.7e-55 undecaprenyl-phosphate galactosephosphotransferase K00996; Psort location: CytoplasmicMembrane, score: 9.82.
    
  0.569
EFB36169.1
Hypothetical protein.
  
     0.569
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.