STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufEFe-S metabolism associated domain protein; KEGG: cps:CPS_2211 5.6e-18 putative selenocysteine lyase K02426; Psort location: Cytoplasmic, score: 8.96. (143 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.973
EFB34983.1
Peptidase, U32 family; KEGG: bth:BT3072 5.7e-161 collagenase precursor K08303; Psort location: Cytoplasmic, score: 8.96.
       0.824
EFB34985.1
KEGG: chu:CHU_0146 9.7e-47 spoU; RNA methylase, SpoU family K00599; Psort location: Cytoplasmic, score: 8.96.
  
    0.739
sufC
KEGG: ava:Ava_0425 2.5e-80 sufC; FeS assembly ATPase SufC K09013.
 
   0.693
sufB
FeS assembly protein SufB.
 
 
 0.692
sufD
FeS assembly protein SufD; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.580
EFB34981.1
Peptidase C1-like family; KEGG: bba:Bd1649 1.5e-08 pepC; putative aminopeptidase C K01372; Psort location: Cytoplasmic, score: 8.96.
       0.557
EFB34982.1
Hypothetical protein.
       0.479
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.