STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34864.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (492 aa)    
Predicted Functional Partners:
EFB36366.1
Carbohydrate kinase, FGGY family protein; KEGG: lsa:LSA1859 3.2e-158 araB; L-ribulokinase K00853.
 
 
 0.580
rhaB
Rhamnulokinase; KEGG: bth:BT3763 1.3e-154 rhamnulose kinase/L-fuculose kinase K00848.
 
 
 0.514
EFB36364.1
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bth:BT0353 2.2e-95 putative sugar epimerase/aldolase K03077.
 
 
 0.491
EFB35251.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bth:BT3232 2.8e-111 gluconate 5-dehydrogenase K00046; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.482
EFB34866.1
Oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
 
     0.479
EFB36950.1
KEGG: bth:BT2493 3.3e-110 ROK family transcriptional repressor, with glucokinase domain K00845; Psort location: Cytoplasmic, score: 9.26.
    
 0.476
EFB34171.1
Carbohydrate kinase, FGGY family protein; KEGG: bth:BT0792 2.4e-192 xylulose kinase (xylulokinase) K00854.
  
 
 0.434
EFB34889.1
KEGG: bth:BT3766 3.6e-111 rhamnulose-1-phosphate aldolase K01629.
  
 
 0.425
EFB34865.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.413
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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