STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34889.1KEGG: bth:BT3766 3.6e-111 rhamnulose-1-phosphate aldolase K01629. (269 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase; KEGG: bth:BT3763 1.3e-154 rhamnulose kinase/L-fuculose kinase K00848.
 
 
 0.964
fba
KEGG: bth:BT1691 1.5e-135 fructose-bisphosphate aldolase, class II K01624.
  
 
 0.888
rhaA
KEGG: bth:BT3764 6.0e-157 L-rhamnose isomerase K01813; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.842
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.839
EFB35600.1
KEGG: ehi:224.t00010 6.0e-09 leucine rich repeat protein K01768.
  
  0.706
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.650
EFB34888.1
L-rhamnose-proton symport protein (RhaT); Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.592
EFB34890.1
Hypothetical protein.
       0.548
EFB36898.1
Inosine guanosine and xanthosine phosphorylase family; KEGG: bfs:BF3274 1.4e-79 punA, deoD, pnp; putative purine nucleoside phosphorylase I K03783; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.482
EFB36114.1
Vitamin B12 dependent methionine synthase, activation domain protein; KEGG: mca:MCA1545 3.8e-49 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; Psort location: Cytoplasmic, score: 8.96.
   
  
 0.445
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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