STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34916.1Hypothetical protein; Psort location: Extracellular, score: 9.64. (1006 aa)    
Predicted Functional Partners:
EFB36836.1
Cellulase (glycosyl hydrolase family 5); KEGG: sde:Sde_2636 9.8e-38 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
  0.719
EFB34718.1
GDSL-like protein; KEGG: chu:CHU_0721 4.0e-25 hypothetical protein K01238.
    
  0.719
EFB34914.1
OmpA family protein; Psort location: OuterMembrane, score: 9.92.
   
  0.673
EFB34915.1
Hypothetical protein.
       0.590
EFB36932.1
Pectinesterase; KEGG: chu:CHU_0744 9.4e-07 CHU large protein K01238; Psort location: Extracellular, score: 9.96.
    
  0.542
EFB35598.1
Peptidase, S8/S53 family; KEGG: sru:SRU_2299 4.8e-37 peptidase families S8 and S53 domain protein; Psort location: Extracellular, score: 9.71.
    
  0.512
EFB36413.1
FtsK/SpoIIIE family protein; KEGG: pen:PSEEN2212 2.0e-95 ftsK; cell division protein FtsK; Psort location: CytoplasmicMembrane, score: 10.00.
    
   0.485
EFB35849.1
Hypothetical protein.
    
   0.469
EFB34917.1
Hypothetical protein.
       0.431
EFB35403.1
OmpA family protein; Psort location: OuterMembrane, score: 9.92.
  
  0.429
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.