STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34937.1ABC transporter, ATP-binding protein; KEGG: cch:Cag_0251 1.7e-74 ATPase; Psort location: Cytoplasmic, score: 9.12. (274 aa)    
Predicted Functional Partners:
EFB34032.1
Permease, YjgP/YjgQ family; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.990
EFB34069.1
Permease, YjgP/YjgQ family; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.984
EFB34938.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
  0.864
EFB34928.1
Hypothetical protein.
  
  
 0.839
EFB34939.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2909 8.1e-43 ABC transporter component K02065.
 
   
0.727
EFB34145.1
Putative acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase; KEGG: bfr:BF0188 1.8e-68 UDP-N-acetylglucosamine acetyltransferase K00677; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.714
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.708
lpxA
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.704
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.692
tig
Trigger factor; KEGG: chu:CHU_1705 5.0e-50 tig; peptidyl-prolyl cis-trans isomerase, trigger factor K03545; Psort location: Cytoplasmic, score: 8.96.
       0.634
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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